Basic Information
VIS ID
TVIS44023666
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
91736264/91269920 (Hg38)
End
91736264/91269920 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/14003630; hsa-mir-1185-1/Downstream/2678306;
Nearest TSS
ENST00000550708/Upstream/11621; ENST00000557524/Downstream/10057;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/5223, chr14-CpG: 22/Downstream/2645
Nearby gene
CCDC88C(-1403) ;
Upstream sequence
GACAAAGAAGCGTGCAGCAGAGGCTAAGGGTGCCAAGAAGTGCCTGGCCAGCTGTCAAGTATTGCAAAGGCCACACAGGATGAAGACTGCGGGTGGCCAC
Downstream sequence
CGCTCAGTCTGGCTCAAAACAGCATGGATGGCAGTTTCTGTGGAGTGGCCAGATACAAGGACAGATTGCAGAGCCTCGGGGAGAACGGGCAAGGAGGTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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