Basic Information
VIS ID
TVIS44023686
Fusion event
HTLV-1-C15orf41 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
36938652/36646451 (Hg38)
End
36938652/36646451 (Hg38)
Orient
-
Location type
Intronic
Target gene
C15orf41
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-17-5p ; hsa-mir-574-5p ; hsa-mir-340-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-3713 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4742-5p ; hsa-mir-5586-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-595 ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609
Nearest miRNA
hsa-mir-1233-1/Upstream/719528; hsa-mir-10393/Downstream/326370;
Nearest TSS
ENST00000557528/Upstream/1168; ENST00000566932/Downstream/22646;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/66755, chr15-CpG: 36/Downstream/171709
Upstream sequence
GGTAAAAGATATGCTTTGTTTTGAGTAGTAATACCTGTCAAAGAAAGATAACATGCACTCATTacacacacacagacacagacacatacacacacacagT
Downstream sequence
TTTGTGTCTAGGAGAGATCCTCTCTAAACAAGACTTTGTAAAGTTTGATGATTTATTCAAAAGTCATAACCTTCTTGGTGAAATTGACATTCAAATTAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate