Basic Information
VIS ID
TVIS44023701
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
End
53676756/53384559 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1107359; hsa-mir-11181/Downstream/1988381;
Nearby gene
WDR72(-129182) ;
Upstream sequence
ATCTGCTTACACGGCTCAGGGAAGGAGGTGACTTTGAAGTGGCTTATGAAGGAGCATTTATGGGCTTCCCAGGCTGATGTGGAGGAGAGGATATTAAAGA
Downstream sequence
TAGAGGAGGTGATAGGACCACGGCATGGCAGCCTGGCAGCCTAGCAGCCTGCAGGTGGCACTGTGCAGTTGGGCCACTCTAAGAGGGTGGTAGAGGGGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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