Basic Information
VIS ID
TVIS44023703
Fusion event
HTLV-1-UNC13C integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
54398039/54105842 (Hg38)
End
54398039/54105842 (Hg38)
Orient
-
Location type
Intronic
Target gene
UNC13C
miRNAs that regulate target gene
hsa-mir-128-3p
Nearest miRNA
hsa-mir-10393/Upstream/1828642; hsa-mir-11181/Downstream/1267098;
Nearest TSS
ENST00000557528/Upstream/92938; ENST00000561210/Downstream/158303;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/346035, chr15-CpG: 52/Downstream/1090702
Upstream sequence
ATAGAAGAATGTGAAAGTGAAGAGTATGTAAGTGGTGGTTTCAACCAGATTTCGTGACTGGCTGAATAGGACAGTAAACAGAATAATTGGAATAAACAAG
Downstream sequence
TAGGATAAAAAGTATAAGATTATTTTATGGCTTTTGACTAGAGGACTAGCTAGAAGCCATCACCATCCTTTGAACAAAGGGAATGCAGGAGGAAGATTGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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