Basic Information
VIS ID
TVIS44023712
Fusion event
HTLV-1-LOC105370850 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
62571908/62279709 (Hg38)
End
62571908/62279709 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC105370850
Nearest miRNA
hsa-mir-10393/Upstream/3108447; hsa-mir-11181/Downstream/24949;
Nearest TSS
ENST00000557528/Upstream/4854; ENST00000569913/Downstream/4481;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/55103, chr15-CpG: 126/Downstream/111237
Nearby gene
MIR8067(No orient, 24949)
Upstream sequence
ATATTCTCCCCAACCCCATATACAACTAGCCAAAGGAGCCTATCAATCTCACCCCGATACTTCAATTTCCTCCAGCCTCCAAAATAAAACTCTCACTGTC
Downstream sequence
CAATATCTCAATTTATATTTTCAAATGTCTAAAATCTTAAAATTAAGAGCAGTGCATTAGCTTTTCCCCATAAACATTTTTGGTATAATTTTACTTAGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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