Basic Information
VIS ID
TVIS44023721
Fusion event
HTLV-1-MIR548H4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
69121464/68829125 (Hg38)
End
69121464/68829125 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR548H4
Nearest miRNA
hsa-mir-10393/Upstream/27200; hsa-mir-11181/Downstream/1250247;
Nearest TSS
ENST00000557528/Upstream/8228; ENST00000561467/Downstream/101375;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/7463, chr15-CpG: 78/Downstream/101125
Upstream sequence
AGCTTTTTTTCTCAGATGATTTAATGAAAATtatggcagtctgctcattgttcagcaaaatccatttcctcttctccttgaacacaaagcttgactatgt
Downstream sequence
ttcctagatggcccttgcagttagttggggccatgtgactgggttctagcttgttgattataagtggaagtgatgctgccacttaaaggcttgAAAGTGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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