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TVIS44023726
Basic Information
VIS ID
TVIS44023726
Fusion event
HTLV-1-SEMA7A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
74711584/74419243 (Hg38)
End
74711584/74419243 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEMA7A
miRNAs that regulate target gene
hsa-mir-615-3p
;
hsa-mir-4267
;
hsa-mir-6762-5p
;
hsa-mir-6845-5p
;
hsa-mir-27a-3p
;
hsa-mir-580-3p
;
hsa-mir-4477a
;
hsa-mir-3926
;
hsa-mir-6722-3p
;
hsa-mir-1909-3p
;
hsa-mir-6836-5p
;
hsa-mir-6132
;
hsa-mir-6770-5p
;
hsa-mir-1253
;
hsa-mir-4461
;
hsa-mir-126-5p
;
hsa-mir-5197-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-320e
;
hsa-mir-4796-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-4429
;
hsa-mir-320d
;
hsa-mir-320c
;
hsa-mir-320b
;
hsa-mir-320a
;
hsa-mir-323a-3p
;
hsa-mir-519d-3p
;
hsa-mir-20b-5p
;
hsa-mir-106b-5p
;
hsa-mir-20a-5p
;
hsa-mir-526b-3p
;
hsa-mir-93-5p
;
hsa-mir-17-5p
;
hsa-mir-106a-5p
;
hsa-mir-33b-5p
;
hsa-mir-33a-5p
;
hsa-mir-3180-5p
;
hsa-mir-525-5p
;
hsa-mir-520a-5p
;
hsa-mir-4294
;
hsa-mir-6774-5p
;
hsa-mir-635
;
hsa-mir-4766-5p
;
hsa-mir-5590-3p
;
hsa-mir-142-5p
;
hsa-mir-577
;
hsa-mir-1264
;
hsa-mir-6507-3p
;
hsa-mir-4309
;
hsa-mir-3198
;
hsa-mir-7977
;
hsa-mir-1289
;
hsa-mir-8082
;
hsa-mir-4534
;
hsa-mir-1273f
;
hsa-mir-6845-3p
;
hsa-mir-3927-5p
;
hsa-mir-5588-3p
;
hsa-mir-6514-5p
Nearest miRNA
hsa-mir-10393/Upstream/7811; hsa-mir-11181/Downstream/369429;
Nearest TSS
ENST00000557528/Upstream/7604;
ENST00000564137/Downstream/14461;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/8329
,
chr15-CpG: 124/Downstream/13739
Upstream sequence
GGGCTCCAGCAACCAGCTGTCCTCACCCACAGCACGGCCCCTCCCCTAGTGTGGCAGCCTCTCCTTCCTTCACAGTATGTGTGATCTCAGAGTGGGGAAG
Downstream sequence
GATTTAGGGACCTCTTGGGGGAACAGACCCCCTCCTCTGGCACACACTTTTGAGGGCTGGGCTAAGGCAGGAGGACCAGGGCTCCTTGGCCATGCTCTGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#3
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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