Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene8199017381908701819118048191334581916338819446588194557481947602819480818194036481940743819483888194856981942300819424498194114081941269819408808194088781949437
Basic Information
VIS ID
TVIS44023732
Fusion event
HTLV-1-LOC102724001 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
End
82241778/81949437 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/951964; hsa-mir-11181/Downstream/1117898;
Nearby gene
MEX3B(-92341) ;
Upstream sequence
GTACAGAGTTCTCTTAGAATAAAATGGGTTCATATATGCTCTTCCTCTAGTTGTCCTTTGTTAAGGAGGCCCTAGGGTACTGTGAGAACCGTACCTCTTC
Downstream sequence
TGAACTAGTAGAACCCAAATAACAGGCAGAGCCATTGCTGGCCAGTGGGGCAGACCAGTTAAGCACATCCTTCCCCAAACTATGCTTATTCTTTCctgag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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