Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44023758
Basic Information
VIS ID
TVIS44023758
Fusion event
HTLV-1-SNX29 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
12583836/12489979 (Hg38)
End
12583836/12489979 (Hg38)
Orient
+
Location type
Intronic
Target gene
SNX29
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-7-5p
;
hsa-mir-6811-5p
;
hsa-mir-6511b-5p
;
hsa-mir-377-3p
;
hsa-mir-6077
;
hsa-mir-4722-5p
;
hsa-mir-1286
;
hsa-mir-873-5p
;
hsa-mir-6128
;
hsa-mir-216b-3p
Nearest miRNA
hsa-mir-1225/Upstream/1183452; hsa-mir-11401/Downstream/230342;
Nearest TSS
ENST00000527434/Upstream/117397;
ENST00000615100/Downstream/67715;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/227847
,
chr16-CpG: 24/Downstream/78526
Upstream sequence
accgcaacctctacctcctgggttcaaacaattcttgtgcctcagcctcctgagtagctgggactataggcatgcaccaccatgcatggctaatttctgt
Downstream sequence
atttttagtagagatggggtttctccatgttggccaggctggtctcaaactcctggcctcaagtgatctgcccacctcagcctcccaaagtgctgggatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#3
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate