VISDB Viral Integration Site DataBase

VIS ID

TVIS44023764

Fusion event

HTLV-1-PKD1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

2159928/2109927 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-20a-5p ; hsa-mir-200c-3p ; hsa-mir-451a ; hsa-mir-412-3p ; hsa-mir-377-3p ; hsa-mir-127-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-3192-5p ; hsa-mir-3667-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4704-3p ; hsa-mir-3620-3p ; hsa-mir-504-5p ; hsa-mir-8485 ; hsa-mir-4787-5p ; hsa-mir-6770-3p ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-6824-5p ; hsa-mir-8065 ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-4467 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4462 ; hsa-mir-6730-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-3914 ; hsa-mir-888-3p ; hsa-mir-1234-3p ; hsa-mir-200b-3p ; hsa-mir-2277-3p ; hsa-mir-429 ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-6777-3p ; hsa-mir-6820-5p ; hsa-mir-7107-5p ; hsa-mir-8084

Nearest miRNA

hsa-mir-1225/Upstream/3174; hsa-mir-11401/Downstream/23192;

Nearest TSS

Nearest CpG islands

chr16-CpG: 325/Target, None/Upstream, None/Downstream

Nearest cancer related gene

PKD1(TSG, No orient, 0)

Upstream sequence

GTGACCAAGTGCAGGCCGGGTGTGGGGAAGCTATGGGTGGTAAATGGCTCGGAGGTCTCCCAGCTCAGCCCCTCCTCCAAGGACCAAGTGTATACGACAC

Downstream sequence

CACTGCCACCAGCCAGCTCGGCACTGAGGGTGACGCTTGTGTTGACGGCAGCTGGGTTCGGGGAGGCGGCCACCATCAGCCACCCCACAGGCTCCACGAA