Basic Information
VIS ID
TVIS44023778
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
413156/363156 (Hg38)
End
413156/363156 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-6859-4/Upstream/346037; hsa-mir-11401/Downstream/172160;
Nearest TSS
ENST00000527434/Upstream/10483; ENST00000454619/Downstream/6647;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1665, chr16-CpG: 74/Downstream/6704
Nearby gene
MRPL28(-4228) ;
Upstream sequence
CCCGGCCTTGAAGCCCTTCCCATGCCATGCTCAGAGCTACCAGCTTGTCTGGGGACAGGATGTGGGTAGGGACACCATCCCAGGACAGCAGGCAGTGGTT
Downstream sequence
AGGGAGGATGGTCCAAGGCTGGAGCCCGCCTAGGGAGGGCTGCGGGGCGCTGCGGCAGAGGGAGCCAGGACCGCACGGGAGCCCAGGCTGCTGGGTGTGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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