Basic Information
VIS ID
TVIS44023789
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
51017316/50983405 (Hg38)
End
51017316/50983405 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/241028; hsa-mir-11401/Downstream/5262115;
Nearest TSS
ENST00000527434/Upstream/99196; ENST00000568607/Downstream/34139;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/141994, chr16-CpG: 40/Downstream/130174
Upstream sequence
TAGAGTCTGGGCTTGTGGGGCCCTCCTGAAGCTGACTGGAGTGAATGTGAGCCATCAGGACTCCTGACTCCCCTGTTGCCAGGCTGAAGCCCAGAGCATG
Downstream sequence
AACCACCCAATCGCTGTTGGGGTGAAAGATGCACAGCTCCACCACTGTGACTCTGGAACCAGCATCATTCAAGTCCTGGTATGTGGAATGGTTCCCagtc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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