Basic Information
VIS ID
TVIS44023814
Fusion event
HTLV-1-LINC02131 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
77625094/77591197 (Hg38)
End
77625094/77591197 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02131
Nearest miRNA
hsa-mir-1225/Upstream/722178; hsa-mir-11401/Downstream/3793821;
Nearest TSS
ENST00000527434/Upstream/391; ENST00000568787/Downstream/131295;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/156020, chr16-CpG: 24/Downstream/131322
Nearby gene
NUDT7(+131295) ;
Upstream sequence
CTGCACCGCCCAAGACTGGCTCTCTGGTggccgggcacaggggctcacacctgtaatcccagcattttgggaggccgaggcaggctgatcacctgtgaag
Downstream sequence
ttcaagaccagcctggccaacatggagaaaccgtgtctctactaaaagtacaaaaattagccaggtatggtggcaggcacctataaccccagctactcac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate