Basic Information
VIS ID
TVIS44023862
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
46102646/48025280 (Hg38)
End
46102646/48025280 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/1052180; hsa-mir-10226/Downstream/7602;
Nearest TSS
ENST00000595228/Upstream/29084; ENST00000583060/Downstream/3280;
Nearest CpG islands
chr17-CpG: 150/Target, None/Upstream, None/Downstream
Nearby gene
COPZ2(-887) ;
Upstream sequence
GTCGGGTCCGCCCTGGGGGCGGAGTTAGTCAGCAGGTCGGTCCGGCGGGAGCGCGTTTCCTGCCGGTCCCTGCAGGTGGCACCATAGGATCGCGGATGCT
Downstream sequence
TTCCTGGGGCGGGGCTTTCCTGGGGCGGGGCTTCCCGCAGTGCTCAGCGCACTCCAGGGGCGGGGCCGGGGTGGAGCCGGGGTGGAACGTGAGCCACCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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