Basic Information
VIS ID
TVIS44023881
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
66096980/68100839 (Hg38)
End
66096980/68100839 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/629254; hsa-mir-1250/Downstream/323612;
Nearest TSS
ENST00000595228/Upstream/55371; ENST00000620266/Downstream/630;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/64663, chr17-CpG: 89/Downstream/548
Nearby gene
LINC00674(No orient, 716)
Upstream sequence
cctaaacgtgtctttaccaaaaataaaagaattagtggggtgtagtggtgcatactgtgatctcagctactgcagaggctcaggtgggaggatcatctga
Downstream sequence
gcctgggaagttgggactgcagtgagtctgggtgacagggagaccctgtcttaaaaaaaaaaaTTTTAGCAGTATAGTTACAAGGTCAAAGGATATGGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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