VISDB Viral Integration Site DataBase

VIS ID

TVIS44023901

Fusion event

HTLV-1-FOXK2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

80485972/82528096 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-769-5p ; hsa-mir-425-5p ; hsa-mir-18a-3p ; hsa-mir-183-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-7-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-636 ; hsa-mir-302e ; hsa-mir-3166 ; hsa-mir-3607-3p ; hsa-mir-3686 ; hsa-mir-6077 ; hsa-mir-1273h-3p ; hsa-mir-4264 ; hsa-mir-3613-3p ; hsa-mir-6079 ; hsa-mir-3646 ; hsa-mir-4694-3p ; hsa-mir-222-5p ; hsa-mir-504-3p ; hsa-mir-4765 ; hsa-mir-4797-3p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-6514-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-3184-3p ; hsa-mir-3667-5p ; hsa-mir-203a-3p ; hsa-mir-4771 ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-2861 ; hsa-mir-6811-3p ; hsa-mir-6735-3p ; hsa-mir-5681a ; hsa-mir-5092 ; hsa-mir-4512 ; hsa-mir-6749-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-1248 ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6865-3p ; hsa-mir-5088-3p ; hsa-mir-6512-5p ; hsa-mir-4790-3p ; hsa-mir-152-5p ; hsa-mir-182-3p ; hsa-mir-218-2-3p ; hsa-mir-224-3p ; hsa-mir-4743-3p ; hsa-mir-522-3p ; hsa-mir-548ao-5p ; hsa-mir-548ax ; hsa-mir-5585-5p ; hsa-mir-5680 ; hsa-mir-597-3p ; hsa-mir-6888-3p

Nearest miRNA

hsa-mir-10226/Upstream/291368; hsa-mir-4525/Downstream/140137;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/7419, chr17-CpG: 58/Downstream/47789

Upstream sequence

tatgttgcccaggctggtcgcaaattcctgtcctcaagcagtccccccacctcagtctgccaaagtgctgggattacaggtgcgagccaccctgcctggc

Downstream sequence

cTATACATGTTTTCAAGTGCTGATCATTTATTAATAGTGAAGTGATTGTAGTCAGGCGTGGCTCCCCCATTTACTGGCAGGTCCCATTTAGACCTGCGGT