Basic Information
VIS ID
TVIS44023903
Fusion event
HTLV-1-LOC101929650 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
81096451/83148682 (Hg38)
End
81096451/83148682 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929650
Nearest miRNA
hsa-mir-10226/Upstream/480375;
Nearest TSS
ENST00000595228/Upstream/4551; ENST00000572850/Downstream/63314;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12916, chr17-CpG: 81/Downstream/3802
Nearby gene
METRNL(+43580) ;
Upstream sequence
GGCAAACTCCCCCCGTGGTCTGGACAGGAAAGCCCCAAGCATCTCTCTGGACTGGGGTGTGGTCGTGTCACAGAGGCATCCTCCCCACCACATACAGACA
Downstream sequence
AATGCTCAGCAGTGCTGACGTCCAGATGCTTCAACACAGGGCTGCCCTCCACCCTGCTTCCTGCACAGAATGAGGATTGGAGGGGGCTGCGGCTGGAGTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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