Basic Information
VIS ID
TVIS44023920
Fusion event
HTLV-1-LOC105372044 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
26815684/29235719 (Hg38)
End
26815684/29235719 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372044
Nearest miRNA
hsa-mir-1-2/Upstream/2644184; hsa-mir-122/Downstream/1063191;
Nearest TSS
ENST00000575820/Upstream/450651; ENST00000584482/Downstream/126244;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1057508, chr18-CpG: 128/Downstream/1805804
Nearby gene
CDH2(-1058274) ;
Upstream sequence
tgcacagagggctcgcctaagcatgcccatggtgaacaattctgtgccttaacacatgcacagtaagggaaataaattaatgtggagtggctcagactaa
Downstream sequence
gggcccacatgtaccctgggggaacagggtgtagccaccaggaatttgtgtcttttgctgggaaggagcctggctcttcagcccctgcgtggaagtcctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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