Basic Information
VIS ID
TVIS44023953
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
62472620/64805384 (Hg38)
End
62472620/64805384 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/6354226; hsa-mir-5011/Downstream/2276200;
Nearest TSS
ENST00000575820/Upstream/545329; ENST00000578545/Downstream/320326;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/802363, chr18-CpG: 88/Downstream/945216
Nearby gene
LINC01924(+381793) ;
Upstream sequence
tttctgggtatataaccaaagaaactgaaatcagcatcttgaagatttacctgaattcccgtgttcattacagcatgattcacaatagccaagatataaa
Downstream sequence
atcaacctaactgtccattgatggatgaaaggataagcaaaatgtggtgtacaaggggatattattcagtctttaaataaaaaggaaagcctgccaaatc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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