Basic Information
VIS ID
TVIS44023957
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
64040747/66373510 (Hg38)
End
64040747/66373510 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/7922352; hsa-mir-5011/Downstream/708074;
Nearest TSS
ENST00000575820/Upstream/452568; ENST00000581951/Downstream/198661;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/622106, chr18-CpG: 83/Downstream/1142490
Nearby gene
CDH19(-127677) ;
Upstream sequence
aatgtagaggaagggatccaaagccttagggatattgggatggtagagtagataagtcactttagagctactcatcccagctggaaaggttcagaagaca
Downstream sequence
tactattgaccaatgccttgtgaaatagatctgtgagggcagcacccgcatctttgaagagccctgaaattgctcttatttctacgtcatatctaacagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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