Basic Information
VIS ID
TVIS44023963
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
76484714/78724714 (Hg38)
End
76484714/78724714 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/5871332;
Nearest TSS
ENST00000575820/Upstream/219549; ENST00000572928/Downstream/71958;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/21036, chr18-CpG: 43/Downstream/1599
Nearby gene
SALL3(+255561) ;
Upstream sequence
CCAGGGCCCGAACCCCTTGGGGGCTGAGCTGACTGTCTCCAGTGCCTGGCAGGTGGAGAGTAATTCTTTTCCCCCAGACGAGGATGGCAGGGTGCCGGCT
Downstream sequence
GTCACTTGAGCATTCCCTTCCTTTTGCCTCTTTTTTTTCCCCAGAAAATGATAGAATCTGCTTTGAGCTCTCATTGGGACTAGCTGATGTTGGCATTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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