Basic Information
VIS ID
TVIS44023990
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29529230/29038323 (Hg38)
End
29529230/29038323 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/8638969; hsa-let-7e/Downstream/6084377;
Nearest TSS
ENST00000633603/Upstream/35731; ENST00000590607/Downstream/174912;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/244220, chr19-CpG: 31/Downstream/54716
Nearby gene
LINC01532(No orient, 24368)
Upstream sequence
ctgctgggctagacaccctggaagaaacactgccaccagggacacagtatggattccactgaatctgaagctgcagctgctggcttgtcatttgcagttc
Downstream sequence
cttacctcagtaaacctgtaagcaaagaaaggagttaccagcctgacagggtattggccaagcttatcatgaatgacagagttgctgctgtgtaggggaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate