Basic Information
VIS ID
TVIS44024021
Fusion event
HTLV-1-SNAPC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
7987525/7922640 (Hg38)
End
7987525/7922640 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA19B
Target gene
SNAPC2
Nearest miRNA
hsa-mir-1227/Upstream/305135; hsa-let-7e/Downstream/466650;
Nearest TSS
ENST00000633603/Upstream/1322; ENST00000595107/Downstream/3526;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1550, chr19-CpG: 204/Downstream/1972
Upstream sequence
TACGCCTGACAGCCCCCCAGCCCATTCCCGCTGGAGGGAGCCTGGGGCCTGCAGCAGAAGGGGATGGGGCTGGCTCCAAGGCACCAGAGGAGACCCCCCC
Downstream sequence
AGCCACCGAGAAGGCCGAGCACAGCGAACTGAAATCGCCTTGGCAAGCAGCTGGGATCTGTCCCCTGAACCCGTTCCTGGTGCCCCTGGAGCTTCTGGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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