Basic Information
VIS ID
TVIS44024028
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
11409677/11429029 (Hg38)
End
11409677/11429029 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/779334; hsa-mir-1-1/Downstream/7041586;
Nearest TSS
ENST00000382410/Upstream/127504; ENST00000450368/Downstream/112618;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/754066, chr20-CpG: 37/Downstream/257845
Nearby gene
LOC339593(-155646) ;
Upstream sequence
TTGTGAATGAATTACACAAGAGAAAAATAAAGCTCAAAATCTGCTTGTCAAATCAAAACTCAAAAAGATAGTAAATGCTACTATTTAAATTTCTAGATAT
Downstream sequence
CAAACAACACATAAGTTATGATTACCTGTATAACtttttaacataataaatgaaatttaaacattaaatttaaaaaaGAACCCATGAATAGTGACTTGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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