VISDB Viral Integration Site DataBase

VIS ID

TVIS44024134

Fusion event

HTLV-1-B3GALT5 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.2

Reference genome

Start

End

40999939/39628012 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4261 ; hsa-mir-6871-5p ; hsa-mir-6783-5p ; hsa-mir-6885-3p ; hsa-mir-3977 ; hsa-mir-1251-3p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4540 ; hsa-mir-6723-5p ; hsa-mir-4682 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5697 ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-3941 ; hsa-mir-644a ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-622 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6818-3p ; hsa-mir-6888-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3120-5p ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-502-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-8064 ; hsa-mir-4693-3p ; hsa-mir-4712-3p ; hsa-mir-2681-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-5100 ; hsa-mir-4777-3p ; hsa-mir-6758-3p ; hsa-mir-4267 ; hsa-mir-10b-3p ; hsa-mir-892c-5p ; hsa-mir-141-5p ; hsa-mir-566 ; hsa-mir-6789-3p

Nearest miRNA

hsa-let-7c/Upstream/180943; hsa-mir-3197/Downstream/584340;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/14945, chr21-CpG: 18/Downstream/516298

Upstream sequence

ATAACTATATGTACTTCTGCACATCAGTGTAACTGTACACAGATTTAAGAGGAAATGATAGGCATTTATACTAGTCACAAAACAATAAAACCAGGGATGA

Downstream sequence

ACACTAAGTTTAATAAAGATCATTTATAATTCTAACCACTTAGAAATAAGAAAATTAACTATGAGGTCAAGGGAGAAATTACGTGTGCAATAACAGATTA