Basic Information
VIS ID
TVIS44024176
Fusion event
HTLV-1-chr22 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
End
36132153/35736106 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/399307; hsa-let-7a-3/Downstream/550741;
Nearby gene
RBFOX2(-2630) ;
Upstream sequence
Ctgtcaggtataggctttgatttctccttccttagaagctgatgcattagcctgttattgtttcacggatattggtggaagacacacgactcggtgagag
Downstream sequence
gcaaaggactttattactcacagtgcagcaggcagcatgagcaccagcatatggaacagttccatgagcccccgagtcccacaggcctggatagatgtgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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