Basic Information
VIS ID
TVIS44024220
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
117314513/118180550 (Hg38)
End
117314513/118180550 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/3356986; hsa-mir-105-1/Downstream/205844;
Nearest TSS
ENST00000429181/Upstream/63210; ENST00000493448/Downstream/165523;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/63484, chrX-CpG: 82/Downstream/165052
Nearby gene
KLHL13(-63210) ;
Upstream sequence
ttctgcaaattcttgagccaaatttgcccaacaaaggtgtccacatgtcgcccaggaatgagtctgtcttactctctccacagtactcagttatgggagg
Downstream sequence
cgacagcccatgggaagtgccagaacacagcagctgaggccctctgtcaattacactttctattttaggaggtcttccaggcacattctaatggccCCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate