Basic Information
VIS ID
TVIS44024253
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
GRCh37/hg19
Start
3176072/3258031 (Hg38)
End
3176072/3258031 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/648777; hsa-let-7f-2/Downstream/3125875;
Nearest TSS
ENST00000429181/Upstream/191198; ENST00000457435/Downstream/13789;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/328561, chrX-CpG: 20/Downstream/52296
Nearby gene
LINC01546(No orient, 13789)
Upstream sequence
ATCTTTCATGTTCCTTCTTTTCCTGTGAAAAAGACAAGTGCCAAATCTTGTTAACTCAGCACGATATATATGCCTCTTTTCTCCCTGGGACTTCGTGTGC
Downstream sequence
CTACGTCCCTTCTGATTCAGGGATAAGAGATTCTGCTTTCAGGGTGAAGTGCAACTGAACGTGTTTTTGGTGTCTCGTGAGCAAAGCCCTAGTGAGCATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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