Basic Information
VIS ID
TVIS44024257
Fusion event
HTLV-1-LOC105373153 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
34086307/34068190 (Hg38)
End
34086307/34068190 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373153
Nearest miRNA
hsa-mir-23c/Upstream/1426631; hsa-let-7f-2/Downstream/3955705;
Nearest TSS
ENST00000429181/Upstream/326072; ENST00000329357/Downstream/64121;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/341356, chrX-CpG: 25/Downstream/62433
Nearby gene
FAM47A(-61562) ;
Upstream sequence
ttcagatatctgcattcccatgtttattgAGGCCCGCTTCTAAGACCACAAATCTTCCACAAATAATCTACTTTCTTCCTTCAGCTCAAGCTATTTAGTA
Downstream sequence
GTTTCCAGTTTCTACTTCTGAAGGGAAATTGTCCTTGGAGCAGCATTAtttctctttatttatttatttgagacagagtttcattcttgttgtccaggct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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