Basic Information
VIS ID
TVIS44024262
Fusion event
HTLV-1-LOC105373182 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
40231601/40372349 (Hg38)
End
40231601/40372349 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373182
Nearest miRNA
hsa-mir-1587/Upstream/534736; hsa-let-7f-2/Downstream/5373808;
Nearest TSS
ENST00000429181/Upstream/109383; ENST00000637954/Downstream/207023;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/104858, chrX-CpG: 103/Downstream/208138
Nearby gene
LOC101927476(No orient, 84627)
Upstream sequence
CCCCCTGCACTCACTTCCCACGTTGGGACATGGCCTTGCCAAAGTCTCCACCACACAGGAAAAGCTTTCCTGACCTCCCCTCACCTGTGTTGTCTTGGAT
Downstream sequence
GCTGTTCCTGACTAGCTTAAAATCCCATTATGTACCTTCAGCCCCTTTGTGCAACTTCCTGGCACATGGCTTCCAGTTGCGATAACTGCCGGCCTCTTCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate