Basic Information
VIS ID
TVIS44024271
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
51290378/51547526 (Hg38)
End
51290378/51547526 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/1532843; hsa-let-7f-2/Downstream/789031;
Nearest TSS
ENST00000429181/Upstream/36521; ENST00000602548/Downstream/71442;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/50274, chrX-CpG: 107/Downstream/70473
Nearby gene
LINC01496(No orient, 40085)
Upstream sequence
acttggtatggtcagactttttaaattgtagacattgtaataggtatgtagtggtgtctcattggggttttagtttgcattcccccaattactgaagatg
Downstream sequence
ttgagcatattttgatgtgcttacttgacatctgttcaaatcatttgcccatttttaatttggttgtttgttttattgttgtattttgagagctctttat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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