Basic Information
VIS ID
TVIS44024281
Fusion event
HTLV-1-LINC01278 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
62777894/63558014 (Hg38)
End
62777894/63558014 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01278
Nearest miRNA
hsa-let-7f-2/Upstream/8106432; hsa-mir-105-1/Downstream/227988;
Nearest TSS
ENST00000429181/Upstream/206670; ENST00000617377/Downstream/86034;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/206467, chrX-CpG: 43/Downstream/196819
Upstream sequence
tagaatcttgtcatttaccatagcatagctggaactggaggacattatgctaagtgaaataagccaggcaaacagagataaatgtcacatgttctcatat
Downstream sequence
atggaaactaaaaaattcaccttatggaggtaatgaatagaatggtggttaccagaggctaggaattgcagttgggtagggggagataaagacaggtggt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate