VISDB Viral Integration Site DataBase

VIS ID

TVIS44024297

Fusion event

HTLV-1-ABCB7 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

q13.3

Reference genome

Start

End

74320233/75100398 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-1-3p ; hsa-mir-935 ; hsa-mir-195-5p ; hsa-mir-10a-5p ; hsa-mir-26a-5p ; hsa-mir-17-3p ; hsa-mir-16-5p ; hsa-mir-6749-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-6756-3p ; hsa-mir-6832-3p ; hsa-mir-3127-3p ; hsa-mir-4495 ; hsa-mir-4762-5p ; hsa-mir-888-5p ; hsa-mir-605-5p ; hsa-mir-5692a ; hsa-mir-1827 ; hsa-mir-25-5p ; hsa-mir-3929 ; hsa-mir-4327 ; hsa-mir-4419b ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-6087 ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6840-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-940 ; hsa-mir-1273g-3p ; hsa-mir-1292-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3192-5p ; hsa-mir-4252 ; hsa-mir-4537 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6731-5p ; hsa-mir-6788-5p ; hsa-mir-6849-3p ; hsa-mir-6878-5p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-8085

Nearest miRNA

hsa-let-7f-2/Upstream/813041; hsa-mir-105-1/Downstream/1818875;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/175089, chrX-CpG: 31/Downstream/422532

Upstream sequence

aacccttaagcagtatcctatcattcttgggataaaaactaaaatctgtaacatggcttataaggctctgcttggtctggcctctggatacctctccagt

Downstream sequence

tatgttttataccactgctttcagtgcttaggccacactgcctttcttttagttccttaaacattccataatcccttctgtcatggggactttacacagt