Basic Information
VIS ID
TVIS44024317
Fusion event
HTLV-1-XRCC6P5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99169771/99914773 (Hg38)
End
99169771/99914773 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
XRCC6P5
Nearest miRNA
hsa-let-7f-2/Upstream/4851547; hsa-mir-105-1/Downstream/6725041;
Nearest TSS
ENST00000429181/Upstream/1340898; ENST00000485971/Downstream/381527;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/3229406, chrX-CpG: 23/Downstream/24563
Upstream sequence
TGACCAGCCAGACATTGAGTGTAACACCGTTGCTTGTTTCACCATATCTGAAAACCAAAAACCAAACACAAACCAGGCATGTCTCTTGTAGATGACTATT
Downstream sequence
TAGCATGGTCTAGCAGAGTGAGTCACCTAAGCTAACAAATAGCTGCCATCTTTATGCACAGCAAACAATGACTATCTTTTACTCATTTATCATCCAATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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