Basic Information
VIS ID
TVIS44024323
Fusion event
HTLV-1-chrY integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
3475228/3607187 (Hg38)
End
3475228/3607187 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/997933; hsa-mir-12120/Downstream/998933;
Nearest TSS
ENST00000430575/Upstream/28072; ENST00000426699/Downstream/429310;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/670945, chrY-CpG: 43/Downstream/1392728
Nearby gene
TGIF2LY(+27146) ;
Upstream sequence
atattctacaagaatgcctataaaatacatatgaaccaggtttgttattgtaatagcaaaatgggaaaatttggggaaaaaaccaactgaacatctatgg
Downstream sequence
tatactggtttaaaattatagtacatccatataatgcagttgctaaaaagaataacaaatcttaccatgtactgttggggataaatacaaaatatgttgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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