VISDB Viral Integration Site DataBase

VIS ID

TVIS44024325

Fusion event

HTLV-1-DBT integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p21.2

Reference genome

Start

End

100711125/100245569 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-374a-5p ; hsa-mir-574-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-4755-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-1279 ; hsa-mir-3976 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-431-5p ; hsa-mir-924 ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-3194-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-3126-3p ; hsa-mir-183-5p ; hsa-mir-5197-5p ; hsa-mir-6747-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6807-5p ; hsa-mir-4735-5p ; hsa-mir-4733-3p ; hsa-mir-1911-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-6835-5p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-122-5p ; hsa-mir-1304-3p ; hsa-mir-143-5p ; hsa-mir-215-3p ; hsa-mir-3135b ; hsa-mir-3184-3p ; hsa-mir-3652 ; hsa-mir-3664-5p ; hsa-mir-4430 ; hsa-mir-4639-3p ; hsa-mir-4705 ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6773-3p ; hsa-mir-6794-3p ; hsa-mir-6879-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2199398; hsa-mir-11399/Downstream/35672;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/32027, chr1-CpG: 36/Downstream/20507

Upstream sequence

AAAGACACCTAGTTCTATGGGGACCATCTGTACCAATTTGCCTGAGGTGACACCCAATTCACCTCTAGTGATTCAAGGCAATTATTAATAACACCATTTT

Downstream sequence

CATTCTCAAATACATCCTGGTTGAACAACTATACGTGTAGTCTAAGTCTTAATGCAATTATTTGACTAAAATAGGTCTTTCCTTGATTTTAAAAATAATT