Basic Information
VIS ID
TVIS44024327
Fusion event
HTLV-1-LINC01709 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
102155567/101690011 (Hg38)
End
102155567/101690011 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1E
Target gene
LINC01709
Nearest miRNA
hsa-mir-101-1/Upstream/1408703; hsa-mir-11399/Downstream/6207212;
Nearest TSS
ENST00000473358/Upstream/50425; ENST00000414923/Downstream/147018;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/452822, chr1-CpG: 85/Downstream/1835459
Nearby gene
OLFM3(-112556) ;
Upstream sequence
GCACATATTTTGTTGGAGTCAGTAAATGTTTAACATAGGAATCTAAATTTTACCTGATAAAGCTTATGTGATCTATGACTTAAGTCTTTTTATATTACCC
Downstream sequence
CACCATTCTTTCTCTTGGAATAGTTCTCTCTTATTAGGTTGCATATGGAGATAATGTGGATTATTGAGAGCTGATGGTATTTTCCAGCAAAAATACAAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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