Basic Information
VIS ID
TVIS44024331
Fusion event
HTLV-1-LOC105378874 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
103118356/102652800 (Hg38)
End
103118356/102652800 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378874
Nearest miRNA
hsa-mir-101-1/Upstream/2371492; hsa-mir-11399/Downstream/5244423;
Nearest TSS
ENST00000473358/Upstream/263170; ENST00000414923/Downstream/201042;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1415611, chr1-CpG: 85/Downstream/872670
Nearby gene
COL11A1(-223667) ;
Upstream sequence
ACTCAGAGAAAATTATAAATTTGATTTGTCTATTTTCCAAAGATGTCTATTTATCTCAAATGATACTTAAGTATCCTGAACTTGATGTCTTGAAATTTTA
Downstream sequence
ATACCTAGAACTAATCCACCTTATGGGGAAAAAAGTGTGTTAATATTTTGTTTTTACAGTATAGAAATCAATTTGTCATCTTAGCTACATTTAGTAACCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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