Basic Information
VIS ID
TVIS44024333
Fusion event
HTLV-1-LOC101928436 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
104065396/103522774 (Hg38)
End
104065396/103522774 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928436
Nearest miRNA
hsa-mir-101-1/Upstream/3241466; hsa-mir-11399/Downstream/4374449;
Nearest TSS
ENST00000473358/Upstream/107895; ENST00000531883/Downstream/2917;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2285585, chr1-CpG: 85/Downstream/2696
Upstream sequence
GAAAATGAGTTAAATTcacagttctcaaactgtgctaaggtgccccaggtacccttgccaccttatagaggtactataggatattttaaatatttgaggg
Downstream sequence
aaacatagcaatactcactgtttaccagacactacctgaactaccagcttgagatgtttctcaatttgaacattagatactgtttaattccttttaagaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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