Basic Information
VIS ID
TVIS44024336
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
104764892/104222270 (Hg38)
End
104764892/104222270 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3940962; hsa-mir-11399/Downstream/3674953;
Nearest TSS
ENST00000473358/Upstream/471864; ENST00000635102/Downstream/1383733;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/695979, chr1-CpG: 37/Downstream/1858501
Nearby gene
LOC100129138(+145199) ;
Upstream sequence
ctctgttttttccccatctttgtggttttatctacctttggtctttgatgatggtgacgtacagattggttttggtgtgtatgacctttatgtttgttag
Downstream sequence
ttttcctactaacagtcaggaccctcagctacaggtctgttggagtttgctgtaggtacactccagaccctgtttgcctgggtatcagcagtggaggctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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