Basic Information
VIS ID
TVIS44024340
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
105955040/105412418 (Hg38)
End
105955040/105412418 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/5131110; hsa-mir-11399/Downstream/2484805;
Nearest TSS
ENST00000473358/Upstream/1662012; ENST00000635102/Downstream/193585;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1886127, chr1-CpG: 37/Downstream/668353
Upstream sequence
tctcatcttaaattataatcccacaatttctacatgtcgtgggagggacctgctaggaggtgattttattacgggggtgtgtcttttctgtgctgctccc
Downstream sequence
atgatagtgaatgactcttatgagatctggtggttttaaaaatgggaatttcccttcacaagctctctttttgcctgctgccatccatgtaaggtgtgac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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