Basic Information
VIS ID
TVIS44024350
Fusion event
HTLV-1-RBM15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
110901143/110358521 (Hg38)
End
110901143/110358521 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBM15
Nearest miRNA
hsa-mir-101-1/Upstream/759554; hsa-mir-11399/Downstream/2103249;
Nearest TSS
ENST00000473358/Upstream/19055; ENST00000609909/Downstream/11633;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/18343, chr1-CpG: 67/Downstream/48749
Nearby gene
SLC16A4(-4330) ;
Nearest cancer related gene
RBM15(OG, No orient, 0)
Upstream sequence
TAAAATAATAGTATATGATTTTTTTCCTCACATGGAAAAAGCTGATTTTACAGTTAGACAAATGTATTTACTAAACATATTTTGCAAACAGGACATAACA
Downstream sequence
CATACCTCAATTATTTGAAAAAAATCACAAAAGTATCATTTCAGTCCATATAAGTATAATTGCTTTTAATAAAGTTAAACTCCTAGAGAATCATTAAAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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