VISDB Viral Integration Site DataBase

VIS ID

TVIS44024352

Fusion event

HTLV-1-MAGI3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.2

Reference genome

Start

End

114165210/113622588 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-633 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-7703 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-129-5p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4282 ; hsa-mir-153-5p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-1227-3p ; hsa-mir-1273g-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-101-1/Upstream/740459; hsa-mir-1182/Downstream/2937436;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/231140, chr1-CpG: 85/Downstream/136304

Upstream sequence

TCTCAATATACTCTCTTTCATAAGTTTGTGACACTTGACTTCATCTTCCTGGTATAGTACTTTGCACATAAAACTCAGTAGATGCTGAGTTTTATAGTAC

Downstream sequence

AGTTGAATAGTATCCAAACTTTCAGAAATTGAGTGCTAAAGGTTGTATCATTTTGACTTCATATAATGGACTCTGGGTTGAAAGTAAGCACAGACAAGGC