Basic Information
VIS ID
TVIS44024357
Fusion event
HTLV-1-LINC01779 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
116710372/116167751 (Hg38)
End
116710372/116167751 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01779
Nearest miRNA
hsa-mir-101-1/Upstream/3285622; hsa-mir-1182/Downstream/392273;
Nearest TSS
ENST00000473358/Upstream/3467; ENST00000488733/Downstream/204917;
Nearest CpG islands
chr1-CpG: 25/Target, None/Upstream, None/Downstream
Nearby gene
MAB21L3(+32511) ;
Upstream sequence
TCTCACCCCAGGGTGCACCGGGCGCTCCTGTCCACCCCACCCCCGCAGCCCACTGGGCCGGGTGAACCCCTGAGCCCCGCTGCAGTGTGTCCGCACTAGA
Downstream sequence
GCCAAGCAGGAGAGGGAAAGGCGTCTGCAGTCCGGGTTTGCCCCAACGTGCTGCTCTCAGAGGTGGTGTCTGGGGACCACCGAGTTTATCTGCGGGTGGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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