Basic Information
VIS ID
TVIS44024358
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
116813553/116270931 (Hg38)
End
116813553/116270931 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3388802; hsa-mir-1182/Downstream/289093;
Nearest TSS
ENST00000473358/Upstream/106647; ENST00000488733/Downstream/101737;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/102292, chr1-CpG: 155/Downstream/101738
Nearby gene
ATP1A1(+102242) ;
Upstream sequence
caatcccccacctagtggttgagtcccttccacagctcctctgcaaacacttagaaatgctcggtggcaggatgtttgctcactgccttcaaaagcaatc
Downstream sequence
tcttccattattaggcatctctatgtgttTTTAAAGTTATTATAAAGTAAAGTAAATACTAACCATCTAAAATTGACTCctacatgttagacactgggct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate