Basic Information
VIS ID
TVIS44024365
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
119802400/119259777 (Hg38)
End
119802400/119259777 (Hg38)
Orient
-
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-101-1/Upstream/2165049; hsa-mir-1182/Downstream/26590810;
Nearest TSS
ENST00000473358/Upstream/113368; ENST00000420059/Downstream/67526;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/118989, chr1-CpG: 25/Downstream/67826
Nearby gene
LOC107985192(-4746) ;
Upstream sequence
ccaatgtctgctagatgccaaagcccatgtgctttcTCTCTACTCAGATAGTACCAAGAGGACTTGATGAGTGATTACATATTTTCTccaattagggttc
Downstream sequence
catcgttgctcactttcctaaattttgtagaaagccatgtgtgtgctccagcctctagcagccctgaggaagaatgcattccactaggttacattgtgct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate