Basic Information
VIS ID
TVIS44024368
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
149793583/149822028 (Hg38)
End
149793583/149822028 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/1433665; hsa-mir-1182/Downstream/670317;
Nearest TSS
ENST00000473358/Upstream/8347; ENST00000578186/Downstream/10631;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8371, chr1-CpG: 86/Downstream/10102
Nearby gene
HIST2H3D(-8347) ;
Upstream sequence
CCAGAAAAACAAAAACAAAAAAACCTCCCAAAAAACCACAACTATAAGTTGTAATCCATAGTGCAATTAATTTACTTGGTAGAGATCATCTTTTCCTTTC
Downstream sequence
ATTTTGCCCTTTTGTAAGAATCATAAAACGGGAAAATATCACCAATAGTAATTATCATTTTGTGAAACTTGTTGCAATTTTTATTTTCCTGTGAATGTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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