Basic Information
VIS ID
TVIS44024387
Fusion event
HTLV-1-SLC27A3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
153749922/153777446 (Hg38)
End
153749922/153777446 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
SLC27A3
Nearest miRNA
hsa-mir-101-1/Upstream/87653; hsa-mir-1182/Downstream/184905;
Nearest TSS
ENST00000473358/Upstream/846; ENST00000531251/Downstream/541;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1224, chr1-CpG: 44/Downstream/6035
Upstream sequence
gctcTGTACAATAGGGCAATGTCACCTGCCTAGACCTACAGACTGAGGAACGGTGAGGGGGGCCATACAGCCACATAACTCCAGGCTGCAGGGTCAAAGG
Downstream sequence
CAGGGAAGGACTGTGTCAGTCCAGGAACAGGCAAGTAAGAGAAGAGGGAGAGAGAGACAAGGAAGTGAGAGTGTGGAGGATGAGATCTTTGGGGCTGGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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