Basic Information
VIS ID
TVIS44024394
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155579324/155609533 (Hg38)
End
155579324/155609533 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/263088; hsa-mir-1182/Downstream/341740;
Nearest TSS
ENST00000473358/Upstream/46726; ENST00000471209/Downstream/672;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/46044, chr1-CpG: 52/Downstream/408
Nearby gene
MSTO1(+637) ;
Upstream sequence
gagatggggtttcaccgtgttagccaggatggtctcgatctcttgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgaac
Downstream sequence
caccgcgcccagcctattctttctttagaatagatcagtggtggcgtattcatacaatggactattccgcagtgatgaaaatgaattatagatatttgca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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