Basic Information
VIS ID
TVIS44024397
Fusion event
HTLV-1-SH2D2A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
156780589/156810797 (Hg38)
End
156780589/156810797 (Hg38)
Orient
+
Location type
Intronic
Target gene
SH2D2A
Nearest miRNA
hsa-mir-101-1/Upstream/390368; hsa-mir-1182/Downstream/125334;
Nearest TSS
ENST00000473358/Upstream/14985; ENST00000533630/Downstream/3314;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/42576, chr1-CpG: 50/Downstream/2934
Upstream sequence
ttttagtagagatggagttttgccacgttggccaggctggtctcgaaatcctgatctcaggtgatccgccactttggcctcccaaagtgctgggattaca
Downstream sequence
ggtgtgagccactgcgcccggccATAAGCTAACATTTTTAAGGGCAGAGACCACCTCAGGAGAGAGGAGCCCCATGTGGGATGGTTCCGTCTCACAGAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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